I've had some of my small intestines took out when i was a baby could this be the cause of my stomach pain?

It possible.: You may have some adhesions causing the pain. Best advice is to get checked by your physician.

Need more info: Without knowing what the surgery entailed and without knowing exactly what you mean by 'stomach pain' the best recommendation would be for you to be evaluated by a doctor. It is important to know where the pain is located , when it occurs and to what it is related and whether you have other symptoms and many other questions. Go see somebody soon, and hope you are better.