Has anyone ever had trouble with pain months after an ovarian cyst removal?

Yes: During reproductive age cysts are very common. Most women would have something considered a cyst at least once per year but would never know unless an x-ray test was performed due to pain. Often though the pain is completely separate from the cyst. The follicle (a cyst) that is the growing egg each month grows to 2-3 cm and ruptures each month. Cyst rupture is normal! cysts unusually cause pain.