What medicine should be taken after two weeks of unprotected sex for preventing pregnancy ?

None. It's too late.: Can check for pregnancy. A urine test gives a reliable result 3 weeks after sex (3 weeks after when conception might have occurred), or 1 week after missing a period. If done sooner, a positive result is likely real, but a negative result may be due to testing too soon, and thus lead to a repeat test. If a woman gets her normal regular period, then she is not pregnant, and a test is not needed.