I have pain in my stomach after waking up sometimes, it usually hurts when i breathe in but is not sensitive to the touch.

Get checked: Maybe stomach but "stomach pain" can be caused by lots of things & may indeed originate outside the GI tract. Further evaluation is in order before anyone can answer "what to do." Your doctor will want to re-examine you as well as know the quality, timing, duration, location, & associations (eating, position, activity, stooling, urinating) of your pain to better direct the next appropriate test.